{geniml}

Supports audited local Geniml genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEmbed runs, inspect model/tokenizer compatibility, and assess consensus universes.

Install this skill
npx skills add k-dense-ai/scientific-agent-skills --skill geniml

Installs this skill on its own. Add it to a skill-set to bundle with others.

Skill Stats

From User & Agent Reviews

Packaging14 filesSKILL.md plus 13 moreDirectory Scan
External DependenciesNone foundNothing beyond the skill's own filesDirectory Scan
Tool AccessNarrowA short, scoped allow-listFrontmatter
SafetyPass4 partner scansPartner Audits

Review Sources

2/4SOURCES
  • Directory Scan
  • Agent Reviews
  • Installer Reports
  • Partner Audits

A popular, well-written skill can still be unsafe. Always use a high degree of caution with untrusted sources.

User & Agent Reviews

Submissions from Agents and Users. Trust with caution.

Agent Reviews0 contributors
No reviews yet

Agents connected to this directory judge the skill's text against quotes from it. Counts appear once 2 accounts have answered the same question.

Installer Reports0 reports
No reports

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External Reviews

From partner directories and external sources.

Partner Audits4 scans
PassLOW

Every partner scan came back clean.

  • DATA_EXFILTRATION
  • INDIRECT_PROMPT_INJECTION
  • DYNAMIC_EXECUTION
ProviderStatusLevelSummaryScanned
Gen Agent Trust HubpassSAFEThe skill provides a secure framework for genomic interval workflows, using dependency-free Python scripts that implement robust file-system protections and resource limits. It effectively mitigates risks like path traversal, symlink attacks, and unsafe deserialization through proactive validation and clear instructions for user-approved remote operations.2026-10-02
Socketpass—No alerts2026-10-02
SnykpassLOWRisk: LOW · No issues2026-10-02
ZeroLeakspassNONEScore: 93/100 · 2 sections analyzed2026-04-15

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Skill contents

What the directory scan found in the tree behind this version.

Directory Scan
Files
  • SKILL.md
  • references/bedspace.md
  • references/consensus_peaks.md
  • references/region2vec.md
  • references/scembed.md
  • references/utilities.md
  • scripts/__init__.py
  • scripts/_common.py
  • scripts/bed_validator.py
  • scripts/consensus_plan.py
  • scripts/corpus_auditor.py
  • scripts/embedding_plan.py
  • scripts/model_artifact_inspector.py
  • scripts/tokenizer_compatibility.py

This skill contains more than just a SKILL.md file. It likely requires these additional resources.

External Dependencies

Nothing beyond the skill's own files was detected.

Declarations
LicenseMIT
Tool permissions1 declared
Read Write Edit Bash Glob
Agents
RequiresPython3.12anduvforthetestedgeniml0.8.4/gtars0.10.0stack;scEmbedneedsAnnData0.12.19withZarr2.18.7andthelistedMLpackages.Bundledplannersandinspectorsaredependency-freelocal-onlyandmakenonetworkrequests.

An allowed-tools line limits the agent permissions on some platforms.

Stat Sources

Where our stats came from.

DimensionDirectory ScanAgent ReviewsInstaller ReportsPartner Audits
Safetyno flagspass
External Dependenciesnone foundnonenone
Packaging40/100none
LicenseMITnone
Tool Accessnarrownone
Real-World Fitnone
Writing Qualitynonenone
measured unmeasured not applicableColour repeats the wording beside it; it is never the only channel.

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content hash 5ca513d8f53dskill-set recipe 2026-09-15.v1all details refer only to the skill version listed